IL_5AJ3_006

3D structure

PDB id

5AJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the small subunit of the mammalian mitoribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UCCAG*CAAAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_35765.1

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

58

Unit IDs

5AJ3|1|A|U|81
5AJ3|1|A|C|82
5AJ3|1|A|C|83
5AJ3|1|A|A|84
5AJ3|1|A|G|85
*
5AJ3|1|A|C|97
5AJ3|1|A|A|98
5AJ3|1|A|A|99
5AJ3|1|A|A|100
5AJ3|1|A|A|101

Current chains

Chain A

MITORIBOSOMAL 12S RRNA

Nearby chains

Chain P

MITORIBOSOMAL PROTEIN BS16M, MRPS16

Chain Q

MITORIBOSOMAL PROTEIN US17M, MRPS17

Chain c

MITORIBOSOMAL PROTEIN MS25, MRPS25

Chain j

MITORIBOSOMAL PROTEIN MS34, MRPS34