IL_5AJ3_017

3D structure

PDB id

5AJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the small subunit of the mammalian mitoribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UUUAA*UGACA

Length

10 nucleotides

Bulged bases

5AJ3|1|A|C|400

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_95526.1

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

34

Unit IDs

5AJ3|1|A|U|301
5AJ3|1|A|U|302
5AJ3|1|A|U|303
5AJ3|1|A|A|304
5AJ3|1|A|A|305
*
5AJ3|1|A|U|397
5AJ3|1|A|G|398
5AJ3|1|A|A|399
5AJ3|1|A|C|400
5AJ3|1|A|A|401

Current chains

Chain A

MITORIBOSOMAL 12S RRNA

Nearby chains

Chain L

MITORIBOSOMAL PROTEIN US12M, MRPS12

Chain O

MITORIBOSOMAL PROTEIN US15M, MRPS15

Chain Q

MITORIBOSOMAL PROTEIN US17M, MRPS17

Chain c

MITORIBOSOMAL PROTEIN MS25, MRPS25