IL_5AJ3_024

3D structure

PDB id

5AJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the small subunit of the mammalian mitoribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

5AJ3|1|A|A|838

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AJ3_024 not in the Motif Atlas

Homologous match to IL_5J7L_039

Geometric discrepancy: 0.1447

The information below is about IL_5J7L_039

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

5AJ3|1|A|G|526
5AJ3|1|A|G|527
*
5AJ3|1|A|C|837
5AJ3|1|A|A|838
5AJ3|1|A|C|839

Current chains

Chain A

MITORIBOSOMAL 12S RRNA

Nearby chains

Chain E

MITORIBOSOMAL PROTEIN US5M, MRPS5

Chain n

MITORIBOSOMAL PROTEIN MS38, MRPS38