IL_5AJ3_037

3D structure

PDB id

5AJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the small subunit of the mammalian mitoribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_99283.1

Basepair signature

cWW-cWW-cSW-cWW-cSH-cWW

Number of instances in this motif group

19

Unit IDs

5AJ3|1|A|G|845
5AJ3|1|A|C|846
5AJ3|1|A|C|847
5AJ3|1|A|C|848
*
5AJ3|1|A|G|923
5AJ3|1|A|U|924
5AJ3|1|A|A|925
5AJ3|1|A|A|926
5AJ3|1|A|C|927

Current chains

Chain A

MITORIBOSOMAL 12S RRNA

Nearby chains

Chain L

MITORIBOSOMAL PROTEIN US12M, MRPS12

Chain V

P-SITE AND A-SITE TRNA

Chain X

MRNA

Chain n

MITORIBOSOMAL PROTEIN MS38, MRPS38