IL_5AJ3_049

3D structure

PDB id

5AJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the small subunit of the mammalian mitoribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCU*AAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AJ3_049 not in the Motif Atlas

Homologous match to IL_6CZR_411

Geometric discrepancy: 0.2188

The information below is about IL_6CZR_411

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

183

Unit IDs

5AJ3|1|A|C|857
5AJ3|1|A|C|858
5AJ3|1|A|U|859
*
5AJ3|1|A|A|911
5AJ3|1|A|A|912
5AJ3|1|A|G|913

Current chains

Chain A

MITORIBOSOMAL 12S RRNA

Nearby chains

Chain L

MITORIBOSOMAL PROTEIN US12M, MRPS12

Chain n

MITORIBOSOMAL PROTEIN MS38, MRPS38