IL_5AJ4_005

3D structure

PDB id

5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 55S mammalian mitoribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AJ4_005 not in the Motif Atlas

Geometric match to IL_6DTD_003

Geometric discrepancy: 0.1887

The information below is about IL_6DTD_003

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

68

Unit IDs

5AJ4|1|AA|C|78
5AJ4|1|AA|C|79
*
5AJ4|1|AA|G|103
5AJ4|1|AA|A|104
5AJ4|1|AA|G|105

Current chains

Chain AA

MITORIBOSOMAL 12S Ribosomal RNA

Nearby chains

Chain AP

MITORIBOSOMAL PROTEIN BS16M, MRPS16

Chain AQ

MITORIBOSOMAL PROTEIN US17M, MRPS17

Chain Ac

MITORIBOSOMAL PROTEIN MS25, MRPS25

Chain Aj

MITORIBOSOMAL PROTEIN MS34, MRPS34