IL_5AJ4_006
3D structure
- PDB id
- 5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 55S mammalian mitoribosome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UCCAG*CAAAA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5AJ4_006 not in the Motif Atlas
- Geometric match to IL_5J7L_274
- Geometric discrepancy: 0.217
- The information below is about IL_5J7L_274
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_17948.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
5AJ4|1|AA|U|81
5AJ4|1|AA|C|82
5AJ4|1|AA|C|83
5AJ4|1|AA|A|84
5AJ4|1|AA|G|85
*
5AJ4|1|AA|C|97
5AJ4|1|AA|A|98
5AJ4|1|AA|A|99
5AJ4|1|AA|A|100
5AJ4|1|AA|A|101
Current chains
- Chain AA
- MITORIBOSOMAL 12S Ribosomal RNA
Nearby chains
- Chain AP
- MITORIBOSOMAL PROTEIN BS16M, MRPS16
- Chain AQ
- MITORIBOSOMAL PROTEIN US17M, MRPS17
- Chain Ac
- MITORIBOSOMAL PROTEIN MS25, MRPS25
- Chain Aj
- MITORIBOSOMAL PROTEIN MS34, MRPS34
Coloring options: