IL_5AJ4_008

3D structure

PDB id

5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 55S mammalian mitoribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCAC*GC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AJ4_008 not in the Motif Atlas

Geometric match to IL_1NTA_003

Geometric discrepancy: 0.236

The information below is about IL_1NTA_003

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.3

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

36

Unit IDs

5AJ4|1|AA|G|116
5AJ4|1|AA|C|117
5AJ4|1|AA|A|118
5AJ4|1|AA|C|119
*
5AJ4|1|AA|G|133
5AJ4|1|AA|C|134

Current chains

Chain AA

MITORIBOSOMAL 12S Ribosomal RNA

Nearby chains

Chain AO

MITORIBOSOMAL PROTEIN US15M, MRPS15

Chain AQ

MITORIBOSOMAL PROTEIN US17M, MRPS17

Chain Aj

MITORIBOSOMAL PROTEIN MS34, MRPS34

Chain An

MITORIBOSOMAL PROTEIN MS38, MRPS38