IL_5AJ4_014

3D structure

PDB id

5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 55S mammalian mitoribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGGUAAAUCU*AUUA

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5AJ4|1|AA|U|230
5AJ4|1|AA|G|231
5AJ4|1|AA|G|232
5AJ4|1|AA|U|233
5AJ4|1|AA|A|234
5AJ4|1|AA|A|235
5AJ4|1|AA|A|236
5AJ4|1|AA|U|237
5AJ4|1|AA|C|238
5AJ4|1|AA|U|239
*
5AJ4|1|AA|A|264
5AJ4|1|AA|U|265
5AJ4|1|AA|U|266
5AJ4|1|AA|A|267

Current chains

Chain AA

MITORIBOSOMAL 12S Ribosomal RNA

Nearby chains

Chain AE

MITORIBOSOMAL PROTEIN US5M, MRPS5

Chain AL

MITORIBOSOMAL PROTEIN US12M, MRPS12

Chain Ai

MITORIBOSOMAL PROTEIN MS33, MRPS33

Chain Ap

28S RIBOSOMAL PROTEIN S18B, MITOCHONDRIAL