IL_5AJ4_016
3D structure
- PDB id
- 5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 55S mammalian mitoribosome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CGUAAAG*CG
- Length
- 9 nucleotides
- Bulged bases
- 5AJ4|1|AA|A|293
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5AJ4_016 not in the Motif Atlas
- Homologous match to IL_5J7L_026
- Geometric discrepancy: 0.1329
- The information below is about IL_5J7L_026
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_38186.6
- Basepair signature
- cWW-L-cWW-L-L-R
- Number of instances in this motif group
- 4
Unit IDs
5AJ4|1|AA|C|290
5AJ4|1|AA|G|291
5AJ4|1|AA|U|292
5AJ4|1|AA|A|293
5AJ4|1|AA|A|294
5AJ4|1|AA|A|295
5AJ4|1|AA|G|296
*
5AJ4|1|AA|C|484
5AJ4|1|AA|G|485
Current chains
- Chain AA
- MITORIBOSOMAL 12S Ribosomal RNA
Nearby chains
- Chain AE
- MITORIBOSOMAL PROTEIN US5M, MRPS5
- Chain AF
- MITORIBOSOMAL PROTEIN BS6M, MRPS6
- Chain AL
- MITORIBOSOMAL PROTEIN US12M, MRPS12
- Chain Ac
- MITORIBOSOMAL PROTEIN MS25, MRPS25
- Chain Am
- MITORIBOSOMAL PROTEIN MS37, MRPS37
- Chain An
- MITORIBOSOMAL PROTEIN MS38, MRPS38
Coloring options: