IL_5AJ4_017

3D structure

PDB id

5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 55S mammalian mitoribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUUAA*UGACA

Length

10 nucleotides

Bulged bases

5AJ4|1|AA|C|400

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AJ4_017 not in the Motif Atlas

Geometric match to IL_4V9F_037

Geometric discrepancy: 0.1756

The information below is about IL_4V9F_037

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_08938.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

25

Unit IDs

5AJ4|1|AA|U|301
5AJ4|1|AA|U|302
5AJ4|1|AA|U|303
5AJ4|1|AA|A|304
5AJ4|1|AA|A|305
*
5AJ4|1|AA|U|397
5AJ4|1|AA|G|398
5AJ4|1|AA|A|399
5AJ4|1|AA|C|400
5AJ4|1|AA|A|401

Current chains

Chain AA

MITORIBOSOMAL 12S Ribosomal RNA

Nearby chains

Chain AL

MITORIBOSOMAL PROTEIN US12M, MRPS12

Chain AO

MITORIBOSOMAL PROTEIN US15M, MRPS15

Chain AQ

MITORIBOSOMAL PROTEIN US17M, MRPS17