IL_5AJ4_020

3D structure

PDB id

5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 55S mammalian mitoribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCA*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AJ4_020 not in the Motif Atlas

Geometric match to IL_3WBM_004

Geometric discrepancy: 0.3057

The information below is about IL_3WBM_004

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_18188.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

5AJ4|1|AA|C|373
5AJ4|1|AA|C|374
5AJ4|1|AA|A|375
*
5AJ4|1|AA|U|382
5AJ4|1|AA|G|383

Current chains

Chain AA

MITORIBOSOMAL 12S Ribosomal RNA

Nearby chains

Chain AF

MITORIBOSOMAL PROTEIN BS6M, MRPS6

Chain AR

MITORIBOSOMAL PROTEIN BS18M, MRPS18C

Chain AU

MITORIBOSOMAL PROTEIN BS21M, MRPS21

Chain Am

MITORIBOSOMAL PROTEIN MS37, MRPS37