IL_5AJ4_022

3D structure

PDB id

5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 55S mammalian mitoribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AAACU*ACUAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AJ4_022 not in the Motif Atlas

Homologous match to IL_5J7L_037

Geometric discrepancy: 0.1887

The information below is about IL_5J7L_037

Detailed Annotation

tSH-tWH-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

5AJ4|1|AA|A|419
5AJ4|1|AA|A|420
5AJ4|1|AA|A|421
5AJ4|1|AA|C|422
5AJ4|1|AA|U|423
*
5AJ4|1|AA|A|439
5AJ4|1|AA|C|440
5AJ4|1|AA|U|441
5AJ4|1|AA|A|442
5AJ4|1|AA|U|443

Current chains

Chain AA

MITORIBOSOMAL 12S Ribosomal RNA

Nearby chains

Chain AK

MITORIBOSOMAL PROTEIN US11M, MRPS11

Chain AU

MITORIBOSOMAL PROTEIN BS21M, MRPS21

Chain BA

Large subunit ribosomal RNA; LSU rRNA