IL_5AJ4_025

3D structure

PDB id

5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 55S mammalian mitoribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGU*AC

Length

5 nucleotides

Bulged bases

5AJ4|1|AA|G|530

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AJ4_025 not in the Motif Atlas

Homologous match to IL_4LFB_036

Geometric discrepancy: 0.2659

The information below is about IL_4LFB_036

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

76

Unit IDs

5AJ4|1|AA|G|529
5AJ4|1|AA|G|530
5AJ4|1|AA|U|531
*
5AJ4|1|AA|A|834
5AJ4|1|AA|C|835

Current chains

Chain AA

MITORIBOSOMAL 12S Ribosomal RNA

Nearby chains

Chain AF

MITORIBOSOMAL PROTEIN BS6M, MRPS6

Chain AX

MRNA

Chain Am

MITORIBOSOMAL PROTEIN MS37, MRPS37