IL_5AJ4_028

3D structure

PDB id

5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 55S mammalian mitoribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCU*AG

Length

5 nucleotides

Bulged bases

5AJ4|1|AA|C|609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AJ4_028 not in the Motif Atlas

Homologous match to IL_5J7L_046

Geometric discrepancy: 0.1912

The information below is about IL_5J7L_046

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

5AJ4|1|AA|C|608
5AJ4|1|AA|C|609
5AJ4|1|AA|U|610
*
5AJ4|1|AA|A|693
5AJ4|1|AA|G|694

Current chains

Chain AA

MITORIBOSOMAL 12S Ribosomal RNA

Nearby chains

Chain AE

MITORIBOSOMAL PROTEIN US5M, MRPS5

Chain AN

MITORIBOSOMAL PROTEIN US14M, MRPS14

Chain Ai

MITORIBOSOMAL PROTEIN MS33, MRPS33