IL_5AJ4_029
3D structure
- PDB id
- 5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 55S mammalian mitoribosome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UAUAC*GUG
- Length
- 8 nucleotides
- Bulged bases
- 5AJ4|1|AA|U|614
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5AJ4_029 not in the Motif Atlas
- Homologous match to IL_4LFB_044
- Geometric discrepancy: 0.1634
- The information below is about IL_4LFB_044
- Detailed Annotation
- Isolated cWS basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_82453.2
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 6
Unit IDs
5AJ4|1|AA|U|612
5AJ4|1|AA|A|613
5AJ4|1|AA|U|614
5AJ4|1|AA|A|615
5AJ4|1|AA|C|616
*
5AJ4|1|AA|G|689
5AJ4|1|AA|U|690
5AJ4|1|AA|G|691
Current chains
- Chain AA
- MITORIBOSOMAL 12S Ribosomal RNA
Nearby chains
- Chain AC
- MITORIBOSOMAL PROTEIN US3M, MRPS24
- Chain AE
- MITORIBOSOMAL PROTEIN US5M, MRPS5
- Chain AJ
- MITORIBOSOMAL PROTEIN US10M, MRPS10
- Chain AN
- MITORIBOSOMAL PROTEIN US14M, MRPS14
- Chain AX
- MRNA
- Chain AY
- P-SITE AND A-SITE TRNA
- Chain Ai
- MITORIBOSOMAL PROTEIN MS33, MRPS33
Coloring options: