IL_5AJ4_031

3D structure

PDB id

5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 55S mammalian mitoribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CA*UAG

Length

5 nucleotides

Bulged bases

5AJ4|1|AA|A|681

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AJ4_031 not in the Motif Atlas

Geometric match to IL_5J7L_049

Geometric discrepancy: 0.1771

The information below is about IL_5J7L_049

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

5AJ4|1|AA|C|620
5AJ4|1|AA|A|621
*
5AJ4|1|AA|U|680
5AJ4|1|AA|A|681
5AJ4|1|AA|G|682

Current chains

Chain AA

MITORIBOSOMAL 12S Ribosomal RNA

Nearby chains

Chain AC

MITORIBOSOMAL PROTEIN US3M, MRPS24

Chain AE

MITORIBOSOMAL PROTEIN US5M, MRPS5

Chain AJ

MITORIBOSOMAL PROTEIN US10M, MRPS10

Chain AN

MITORIBOSOMAL PROTEIN US14M, MRPS14

Chain AX

MRNA

Chain AY

P-SITE AND A-SITE TRNA