IL_5AJ4_038

3D structure

PDB id

5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 55S mammalian mitoribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AJ4_038 not in the Motif Atlas

Geometric match to IL_5MWI_007

Geometric discrepancy: 0.1492

The information below is about IL_5MWI_007

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

259

Unit IDs

5AJ4|1|AA|G|849
5AJ4|1|AA|U|850
5AJ4|1|AA|C|851
*
5AJ4|1|AA|G|920
5AJ4|1|AA|U|921
5AJ4|1|AA|C|922

Current chains

Chain AA

MITORIBOSOMAL 12S Ribosomal RNA

Nearby chains

Chain AL

MITORIBOSOMAL PROTEIN US12M, MRPS12

Chain AV

P-SITE AND A-SITE TRNA

Chain AX

MRNA

Chain AY

P-SITE AND A-SITE TRNA

Chain An

MITORIBOSOMAL PROTEIN MS38, MRPS38

Chain BA

Large subunit ribosomal RNA; LSU rRNA