IL_5AJ4_040

3D structure

PDB id

5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 55S mammalian mitoribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCUC*GAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AJ4_040 not in the Motif Atlas

Homologous match to IL_6CZR_168

Geometric discrepancy: 0.1942

The information below is about IL_6CZR_168

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67743.1

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

9

Unit IDs

5AJ4|1|AA|C|857
5AJ4|1|AA|C|858
5AJ4|1|AA|U|859
5AJ4|1|AA|C|860
*
5AJ4|1|AA|G|910
5AJ4|1|AA|A|911
5AJ4|1|AA|A|912
5AJ4|1|AA|G|913

Current chains

Chain AA

MITORIBOSOMAL 12S Ribosomal RNA

Nearby chains

Chain AL

MITORIBOSOMAL PROTEIN US12M, MRPS12

Chain An

MITORIBOSOMAL PROTEIN MS38, MRPS38

Chain BA

Large subunit ribosomal RNA; LSU rRNA