IL_5AJ4_041
3D structure
- PDB id
- 5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 55S mammalian mitoribosome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CAAG*CAAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5AJ4_041 not in the Motif Atlas
- Homologous match to IL_5J7L_062
- Geometric discrepancy: 0.233
- The information below is about IL_5J7L_062
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.15
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 34
Unit IDs
5AJ4|1|AA|C|860
5AJ4|1|AA|A|861
5AJ4|1|AA|A|862
5AJ4|1|AA|G|863
*
5AJ4|1|AA|C|907
5AJ4|1|AA|A|908
5AJ4|1|AA|A|909
5AJ4|1|AA|G|910
Current chains
- Chain AA
- MITORIBOSOMAL 12S Ribosomal RNA
Nearby chains
- Chain AL
- MITORIBOSOMAL PROTEIN US12M, MRPS12
- Chain An
- MITORIBOSOMAL PROTEIN MS38, MRPS38
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: