IL_5AJ4_057

3D structure

PDB id

5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 55S mammalian mitoribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GC*GAC

Length

5 nucleotides

Bulged bases

5AJ4|1|BA|A|310

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AJ4_057 not in the Motif Atlas

Homologous match to IL_5J7L_261

Geometric discrepancy: 0.1073

The information below is about IL_5J7L_261

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

5AJ4|1|BA|G|264
5AJ4|1|BA|C|265
*
5AJ4|1|BA|G|309
5AJ4|1|BA|A|310
5AJ4|1|BA|C|311

Current chains

Chain BA

MITORIBOSOMAL 16S Ribosomal RNA

Nearby chains

Chain BD

MITORIBOSOMAL PROTEIN UL2M, MRPL2