IL_5AJ4_059
3D structure
- PDB id
- 5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 55S mammalian mitoribosome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GAG*CUAAC
- Length
- 8 nucleotides
- Bulged bases
- 5AJ4|1|BA|A|322, 5AJ4|1|BA|U|334, 5AJ4|1|BA|A|335, 5AJ4|1|BA|A|336
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5AJ4_059 not in the Motif Atlas
- Homologous match to IL_7RQB_023
- Geometric discrepancy: 0.1452
- The information below is about IL_7RQB_023
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_90991.6
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
5AJ4|1|BA|G|321
5AJ4|1|BA|A|322
5AJ4|1|BA|G|323
*
5AJ4|1|BA|C|333
5AJ4|1|BA|U|334
5AJ4|1|BA|A|335
5AJ4|1|BA|A|336
5AJ4|1|BA|C|337
Current chains
- Chain BA
- MITORIBOSOMAL 16S Ribosomal RNA
Nearby chains
- Chain B7
- MITORIBOSOMAL PROTEIN BL34M, MRPL34
- Chain BD
- MITORIBOSOMAL PROTEIN UL2M, MRPL2
- Chain BF
- MITORIBOSOMAL PROTEIN UL4M, MRPL4
- Chain BW
- MITORIBOSOMAL PROTEIN UL22M, MRPL22
Coloring options: