IL_5AJ4_065
3D structure
- PDB id
- 5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 55S mammalian mitoribosome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- AUGAGUAA*UGAAAUU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5AJ4_065 not in the Motif Atlas
- Homologous match to IL_5J7L_289
- Geometric discrepancy: 0.1379
- The information below is about IL_5J7L_289
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.10
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
5AJ4|1|BA|A|638
5AJ4|1|BA|U|639
5AJ4|1|BA|G|640
5AJ4|1|BA|A|641
5AJ4|1|BA|G|642
5AJ4|1|BA|U|643
5AJ4|1|BA|A|644
5AJ4|1|BA|A|645
*
5AJ4|1|BA|U|1004
5AJ4|1|BA|G|1005
5AJ4|1|BA|A|1006
5AJ4|1|BA|A|1007
5AJ4|1|BA|A|1008
5AJ4|1|BA|U|1009
5AJ4|1|BA|U|1010
Current chains
- Chain BA
- MITORIBOSOMAL 16S Ribosomal RNA
Nearby chains
- Chain B5
- MITORIBOSOMAL PROTEIN BL32M, MRPL32
- Chain BF
- MITORIBOSOMAL PROTEIN UL4M, MRPL4
- Chain BR
- MITORIBOSOMAL PROTEIN BL17M, MRPL17
- Chain BU
- MITORIBOSOMAL PROTEIN BL20M, MRPL20
- Chain BW
- MITORIBOSOMAL PROTEIN UL22M, MRPL22
Coloring options: