IL_5AJ4_079

3D structure

PDB id

5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 55S mammalian mitoribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GC*GUAU

Length

6 nucleotides

Bulged bases

5AJ4|1|BA|U|958, 5AJ4|1|BA|A|959

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AJ4_079 not in the Motif Atlas

Geometric match to IL_7V9E_001

Geometric discrepancy: 0.2223

The information below is about IL_7V9E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.2

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

5AJ4|1|BA|G|926
5AJ4|1|BA|C|927
*
5AJ4|1|BA|G|957
5AJ4|1|BA|U|958
5AJ4|1|BA|A|959
5AJ4|1|BA|U|960

Current chains

Chain BA

MITORIBOSOMAL 16S Ribosomal RNA

Nearby chains

Chain AV

P-SITE AND A-SITE TRNA

Chain An

MITORIBOSOMAL PROTEIN MS38, MRPS38