IL_5AJ4_080

3D structure

PDB id

5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 55S mammalian mitoribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAUAAUCACUUG*CUUG

Length

16 nucleotides

Bulged bases

5AJ4|1|BA|A|931, 5AJ4|1|BA|U|937, 5AJ4|1|BA|U|956

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5AJ4|1|BA|C|927
5AJ4|1|BA|A|928
5AJ4|1|BA|U|929
5AJ4|1|BA|A|930
5AJ4|1|BA|A|931
5AJ4|1|BA|U|932
5AJ4|1|BA|C|933
5AJ4|1|BA|A|934
5AJ4|1|BA|C|935
5AJ4|1|BA|U|936
5AJ4|1|BA|U|937
5AJ4|1|BA|G|938
*
5AJ4|1|BA|C|954
5AJ4|1|BA|U|955
5AJ4|1|BA|U|956
5AJ4|1|BA|G|957

Current chains

Chain BA

MITORIBOSOMAL 16S Ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AV

P-SITE AND A-SITE TRNA

Chain AY

P-SITE AND A-SITE TRNA

Chain An

MITORIBOSOMAL PROTEIN MS38, MRPS38