IL_5AJ4_083

3D structure

PDB id

5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 55S mammalian mitoribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AUG*CU

Length

5 nucleotides

Bulged bases

5AJ4|1|BA|U|1061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AJ4_083 not in the Motif Atlas

Homologous match to IL_7RQB_080

Geometric discrepancy: 0.1287

The information below is about IL_7RQB_080

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.16

Basepair signature

cWW-L-cWW

Number of instances in this motif group

116

Unit IDs

5AJ4|1|BA|A|1060
5AJ4|1|BA|U|1061
5AJ4|1|BA|G|1062
*
5AJ4|1|BA|C|1263
5AJ4|1|BA|U|1264

Current chains

Chain BA

MITORIBOSOMAL 16S Ribosomal RNA

Nearby chains

Chain BF

MITORIBOSOMAL PROTEIN UL4M, MRPL4

Chain BP

MITORIBOSOMAL PROTEIN UL15M, MRPL15