IL_5AJ4_084

3D structure

PDB id

5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 55S mammalian mitoribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

5AJ4|1|BA|A|1260

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AJ4_084 not in the Motif Atlas

Homologous match to IL_4WF9_081

Geometric discrepancy: 0.1348

The information below is about IL_4WF9_081

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

68

Unit IDs

5AJ4|1|BA|G|1063
5AJ4|1|BA|A|1064
*
5AJ4|1|BA|U|1259
5AJ4|1|BA|A|1260
5AJ4|1|BA|C|1261
5AJ4|1|BA|C|1262

Current chains

Chain BA

MITORIBOSOMAL 16S Ribosomal RNA

Nearby chains

Chain AV

P-SITE AND A-SITE TRNA