IL_5AJ4_085

3D structure

PDB id

5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 55S mammalian mitoribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UAAC*GCA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AJ4_085 not in the Motif Atlas

Geometric match to IL_4V9F_053

Geometric discrepancy: 0.2623

The information below is about IL_4V9F_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49140.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

4

Unit IDs

5AJ4|1|BA|U|1073
5AJ4|1|BA|A|1074
5AJ4|1|BA|A|1075
5AJ4|1|BA|C|1076
*
5AJ4|1|BA|G|1136
5AJ4|1|BA|C|1137
5AJ4|1|BA|A|1138

Current chains

Chain BA

MITORIBOSOMAL 16S Ribosomal RNA

Nearby chains

Chain B1

MITORIBOSOMAL PROTEIN BL28M, MRPL28