IL_5AJ4_086

3D structure

PDB id

5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 55S mammalian mitoribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AUU*ACU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AJ4_086 not in the Motif Atlas

Homologous match to IL_5J7L_326

Geometric discrepancy: 0.2677

The information below is about IL_5J7L_326

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

5AJ4|1|BA|A|1078
5AJ4|1|BA|U|1079
5AJ4|1|BA|U|1080
*
5AJ4|1|BA|A|1132
5AJ4|1|BA|C|1133
5AJ4|1|BA|U|1134

Current chains

Chain BA

MITORIBOSOMAL 16S Ribosomal RNA

Nearby chains

Chain B1

MITORIBOSOMAL PROTEIN BL28M, MRPL28

Chain BI

MITORIBOSOMAL PROTEIN BL9M, MRPL9