IL_5AJ4_089

3D structure

PDB id

5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 55S mammalian mitoribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UAG*CA

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AJ4_089 not in the Motif Atlas

Geometric match to IL_4V88_412

Geometric discrepancy: 0.2246

The information below is about IL_4V88_412

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

5AJ4|1|BA|U|1192
5AJ4|1|BA|A|1193
5AJ4|1|BA|G|1194
*
5AJ4|1|BA|C|1205
5AJ4|1|BA|A|1206

Current chains

Chain BA

MITORIBOSOMAL 16S Ribosomal RNA

Nearby chains

Chain B0

MITORIBOSOMAL PROTEIN BL27M, MRPL27

Chain B8

MITORIBOSOMAL PROTEIN BL35M, MRPL35

Chain Bb

MITORIBOSOMAL PROTEIN ML38, MRPL38