IL_5AJ4_090

3D structure

PDB id

5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 55S mammalian mitoribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AG*CCU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AJ4_090 not in the Motif Atlas

Homologous match to IL_4WF9_089

Geometric discrepancy: 0.1065

The information below is about IL_4WF9_089

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

61

Unit IDs

5AJ4|1|BA|A|1274
5AJ4|1|BA|G|1275
*
5AJ4|1|BA|C|1319
5AJ4|1|BA|C|1320
5AJ4|1|BA|U|1321

Current chains

Chain BA

MITORIBOSOMAL 16S Ribosomal RNA

Nearby chains

Chain AY

P-SITE AND A-SITE TRNA

Chain BE

MITORIBOSOMAL PROTEIN UL3M, MRPL3

Chain Bt

MITORIBOSOMAL PROTEIN ML63, MRPL57