IL_5AJ4_092

3D structure

PDB id

5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 55S mammalian mitoribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCAA*UAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AJ4_092 not in the Motif Atlas

Homologous match to IL_7RQB_093

Geometric discrepancy: 0.1532

The information below is about IL_7RQB_093

Detailed Annotation

Major groove platform with extra pair

Broad Annotation

Major groove platform

Motif group

IL_63450.2

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

8

Unit IDs

5AJ4|1|BA|G|1277
5AJ4|1|BA|C|1278
5AJ4|1|BA|A|1279
5AJ4|1|BA|A|1280
*
5AJ4|1|BA|U|1314
5AJ4|1|BA|A|1315
5AJ4|1|BA|C|1316

Current chains

Chain BA

MITORIBOSOMAL 16S Ribosomal RNA

Nearby chains

Chain AY

P-SITE AND A-SITE TRNA

Chain B0

MITORIBOSOMAL PROTEIN BL27M, MRPL27

Chain BJ

MITORIBOSOMAL PROTEIN UL10M, MRPL10

Chain BQ

MITORIBOSOMAL PROTEIN UL16M, MRPL16

Chain Bt

MITORIBOSOMAL PROTEIN ML63, MRPL57