IL_5AJ4_093
3D structure
- PDB id
- 5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 55S mammalian mitoribosome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- AUC*GGUUU
- Length
- 8 nucleotides
- Bulged bases
- 5AJ4|1|BA|U|1312
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5AJ4_093 not in the Motif Atlas
- Geometric match to IL_5J7L_337
- Geometric discrepancy: 0.1881
- The information below is about IL_5J7L_337
- Detailed Annotation
- Major groove minor groove platform with extra cWW
- Broad Annotation
- Major groove minor groove platform with extra cWW
- Motif group
- IL_51387.3
- Basepair signature
- cWW-cSH-cWW-cWW
- Number of instances in this motif group
- 21
Unit IDs
5AJ4|1|BA|A|1280
5AJ4|1|BA|U|1281
5AJ4|1|BA|C|1282
*
5AJ4|1|BA|G|1310
5AJ4|1|BA|G|1311
5AJ4|1|BA|U|1312
5AJ4|1|BA|U|1313
5AJ4|1|BA|U|1314
Current chains
- Chain BA
- MITORIBOSOMAL 16S Ribosomal RNA
Nearby chains
- Chain AY
- P-SITE AND A-SITE TRNA
- Chain BJ
- MITORIBOSOMAL PROTEIN UL10M, MRPL10
- Chain BQ
- MITORIBOSOMAL PROTEIN UL16M, MRPL16
- Chain Bt
- MITORIBOSOMAL PROTEIN ML63, MRPL57
Coloring options: