IL_5AJ4_094
3D structure
- PDB id
- 5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 55S mammalian mitoribosome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UCUAG*CGACA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5AJ4_094 not in the Motif Atlas
- Homologous match to IL_5J7L_338
- Geometric discrepancy: 0.1421
- The information below is about IL_5J7L_338
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_17948.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
5AJ4|1|BA|U|1287
5AJ4|1|BA|C|1288
5AJ4|1|BA|U|1289
5AJ4|1|BA|A|1290
5AJ4|1|BA|G|1291
*
5AJ4|1|BA|C|1301
5AJ4|1|BA|G|1302
5AJ4|1|BA|A|1303
5AJ4|1|BA|C|1304
5AJ4|1|BA|A|1305
Current chains
- Chain BA
- MITORIBOSOMAL 16S Ribosomal RNA
Nearby chains
- Chain AY
- P-SITE AND A-SITE TRNA
- Chain B9
- MITORIBOSOMAL PROTEIN BL36M, MRPL36
- Chain BQ
- MITORIBOSOMAL PROTEIN UL16M, MRPL16
- Chain Bq
- MITORIBOSOMAL PROTEIN ML54, MRPL54
Coloring options: