IL_5AJ4_096

3D structure

PDB id

5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 55S mammalian mitoribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AUC*GUGAU

Length

8 nucleotides

Bulged bases

5AJ4|1|BA|G|1397, 5AJ4|1|BA|A|1398

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AJ4_096 not in the Motif Atlas

Homologous match to IL_4WF9_095

Geometric discrepancy: 0.1732

The information below is about IL_4WF9_095

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

5AJ4|1|BA|A|1331
5AJ4|1|BA|U|1332
5AJ4|1|BA|C|1333
*
5AJ4|1|BA|G|1395
5AJ4|1|BA|U|1396
5AJ4|1|BA|G|1397
5AJ4|1|BA|A|1398
5AJ4|1|BA|U|1399

Current chains

Chain BA

MITORIBOSOMAL 16S Ribosomal RNA

Nearby chains

Chain B5

MITORIBOSOMAL PROTEIN BL32M, MRPL32

Chain BE

MITORIBOSOMAL PROTEIN UL3M, MRPL3