IL_5AJ4_097

3D structure

PDB id

5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 55S mammalian mitoribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CA*UACG

Length

6 nucleotides

Bulged bases

5AJ4|1|BA|A|1393, 5AJ4|1|BA|C|1394

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AJ4_097 not in the Motif Atlas

Geometric match to IL_5J7L_341

Geometric discrepancy: 0.1115

The information below is about IL_5J7L_341

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

5AJ4|1|BA|C|1333
5AJ4|1|BA|A|1334
*
5AJ4|1|BA|U|1392
5AJ4|1|BA|A|1393
5AJ4|1|BA|C|1394
5AJ4|1|BA|G|1395

Current chains

Chain BA

MITORIBOSOMAL 16S Ribosomal RNA

Nearby chains

Chain AY

P-SITE AND A-SITE TRNA

Chain BE

MITORIBOSOMAL PROTEIN UL3M, MRPL3

Chain BN

MITORIBOSOMAL PROTEIN UL13M, MRPL13