IL_5APO_005
3D structure
- PDB id
- 5APO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.41 Å
Loop
- Sequence
- CUGAACUU*AUCAAUAAG
- Length
- 17 nucleotides
- Bulged bases
- 5APO|1|5|A|49||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5APO_005 not in the Motif Atlas
- Geometric match to IL_5TBW_005
- Geometric discrepancy: 0.0762
- The information below is about IL_5TBW_005
- Detailed Annotation
- tSH-tHW-tHH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_35728.2
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
5APO|1|5|C|31||||P_1
5APO|1|5|U|32||||P_1
5APO|1|5|G|33||||P_1
5APO|1|5|A|34||||P_1
5APO|1|5|A|35||||P_1
5APO|1|5|C|36||||P_1
5APO|1|5|U|37||||P_1
5APO|1|5|U|38||||P_1
*
5APO|1|5|A|45||||P_1
5APO|1|5|U|46||||P_1
5APO|1|5|C|47||||P_1
5APO|1|5|A|48||||P_1
5APO|1|5|A|49||||P_1
5APO|1|5|U|50||||P_1
5APO|1|5|A|51||||P_1
5APO|1|5|A|52||||P_1
5APO|1|5|G|53||||P_1
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain L
- 60S ribosomal protein L13-A
- Chain N
- 60S ribosomal protein L15-A
- Chain a
- 60S ribosomal protein L28
- Chain j
- 60S ribosomal protein L37-A
- Chain o
- 60S ribosomal protein L42-A
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