IL_5APO_014
3D structure
- PDB id
- 5APO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.41 Å
Loop
- Sequence
- GAAC*GAGUGAAAAAGUAC
- Length
- 18 nucleotides
- Bulged bases
- 5APO|1|5|A|398||||P_1, 5APO|1|5|A|402||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5APO_014 not in the Motif Atlas
- Homologous match to IL_5TBW_014
- Geometric discrepancy: 0.0855
- The information below is about IL_5TBW_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60992.7
- Basepair signature
- cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L
- Number of instances in this motif group
- 6
Unit IDs
5APO|1|5|G|376||||P_1
5APO|1|5|A|377||||P_1
5APO|1|5|A|378||||P_1
5APO|1|5|C|379||||P_1
*
5APO|1|5|G|390||||P_1
5APO|1|5|A|391||||P_1
5APO|1|5|G|392||||P_1
5APO|1|5|U|393||||P_1
5APO|1|5|G|394||||P_1
5APO|1|5|A|395||||P_1
5APO|1|5|A|396||||P_1
5APO|1|5|A|397||||P_1
5APO|1|5|A|398||||P_1
5APO|1|5|A|399||||P_1
5APO|1|5|G|400||||P_1
5APO|1|5|U|401||||P_1
5APO|1|5|A|402||||P_1
5APO|1|5|C|403||||P_1
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain P
- 60S ribosomal protein L17-A
- Chain Y
- 60S ribosomal protein L26-A
- Chain l
- 60S ribosomal protein L39
- Chain x
- Probable metalloprotease ARX1
- Chain y
- CYTOPLASMIC 60S SUBUNIT BIOGENESIS FACTOR REI1
- Chain z
- ALB1
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