IL_5APO_015
3D structure
- PDB id
- 5APO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.41 Å
Loop
- Sequence
- GUGAAAU*ACGGAUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5APO_015 not in the Motif Atlas
- Homologous match to IL_5TBW_015
- Geometric discrepancy: 0.0719
- The information below is about IL_5TBW_015
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_66414.7
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
5APO|1|5|G|404||||P_1
5APO|1|5|U|405||||P_1
5APO|1|5|G|406||||P_1
5APO|1|5|A|407||||P_1
5APO|1|5|A|408||||P_1
5APO|1|5|A|409||||P_1
5APO|1|5|U|410||||P_1
*
5APO|1|8|A|13||||P_1
5APO|1|8|C|14||||P_1
5APO|1|8|G|15||||P_1
5APO|1|8|G|16||||P_1
5APO|1|8|A|17||||P_1
5APO|1|8|U|18||||P_1
5APO|1|8|C|19||||P_1
Current chains
- Chain 5
- 25S ribosomal RNA
- Chain 8
- 5.8S ribosomal RNA
Nearby chains
- Chain C
- 60S ribosomal protein L4-A
- Chain P
- 60S ribosomal protein L17-A
- Chain e
- 60S ribosomal protein L32
- Chain y
- CYTOPLASMIC 60S SUBUNIT BIOGENESIS FACTOR REI1
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