IL_5APO_024
3D structure
- PDB id
- 5APO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.41 Å
Loop
- Sequence
- CC*GAG
- Length
- 5 nucleotides
- Bulged bases
- 5APO|1|5|A|780||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5APO_024 not in the Motif Atlas
- Homologous match to IL_5TBW_024
- Geometric discrepancy: 0.1473
- The information below is about IL_5TBW_024
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_31462.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 127
Unit IDs
5APO|1|5|C|752||||P_1
5APO|1|5|C|753||||P_1
*
5APO|1|5|G|779||||P_1
5APO|1|5|A|780||||P_1
5APO|1|5|G|781||||P_1
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain Q
- 60S ribosomal protein L18-A
- Chain a
- 60S ribosomal protein L28
- Chain b
- 60S ribosomal protein L29
Coloring options: