IL_5APO_059
3D structure
- PDB id
- 5APO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.41 Å
Loop
- Sequence
- UGACGAAG*UCGAA
- Length
- 13 nucleotides
- Bulged bases
- 5APO|1|5|C|1391||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5APO_059 not in the Motif Atlas
- Homologous match to IL_5TBW_059
- Geometric discrepancy: 0.0957
- The information below is about IL_5TBW_059
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_70923.5
- Basepair signature
- cWW-cWW-tSS-tSH-tHS-cWW-tHS
- Number of instances in this motif group
- 32
Unit IDs
5APO|1|5|U|1388||||P_1
5APO|1|5|G|1389||||P_1
5APO|1|5|A|1390||||P_1
5APO|1|5|C|1391||||P_1
5APO|1|5|G|1392||||P_1
5APO|1|5|A|1393||||P_1
5APO|1|5|A|1394||||P_1
5APO|1|5|G|1395||||P_1
*
5APO|1|5|U|1415||||P_1
5APO|1|5|C|1416||||P_1
5APO|1|5|G|1417||||P_1
5APO|1|5|A|1418||||P_1
5APO|1|5|A|1419||||P_1
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain C
- 60S ribosomal protein L4-A
- Chain E
- 60S RIBOSOMAL PROTEIN EL6
- Chain P
- 60S ribosomal protein L17-A
- Chain Y
- 60S ribosomal protein L26-A
- Chain e
- 60S ribosomal protein L32
- Chain z
- ALB1
Coloring options: