IL_5APO_062

3D structure

PDB id

5APO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.41 Å

Loop

Sequence

GGUU*AC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5APO_062 not in the Motif Atlas

Geometric match to IL_4V9F_050

Geometric discrepancy: 0.103

The information below is about IL_4V9F_050

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.7

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

5APO|1|5|G|1492||||P_1
5APO|1|5|G|1493||||P_1
5APO|1|5|U|1494||||P_1
5APO|1|5|U|1495||||P_1
*
5APO|1|5|A|1835||||P_1
5APO|1|5|C|1836||||P_1

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain X

60S ribosomal protein L25

Chain g

60S ribosomal protein L34-A

Chain j

60S ribosomal protein L37-A

Chain l

60S ribosomal protein L39