IL_5APO_115

3D structure

PDB id

5APO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.41 Å

Loop

Sequence

UA*UAAG

Length

6 nucleotides

Bulged bases

5APO|1|5|A|2911||||P_1

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5APO_115 not in the Motif Atlas

Geometric match to IL_5TBW_111

Geometric discrepancy: 0.1574

The information below is about IL_5TBW_111

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_95601.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

5APO|1|5|U|2891||||P_1
5APO|1|5|A|2892||||P_1
*
5APO|1|5|U|2909||||P_1
5APO|1|5|A|2910||||P_1
5APO|1|5|A|2911||||P_1
5APO|1|5|G|2912||||P_1

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain O

60S ribosomal protein L16-A

Chain m

Ubiquitin-60S ribosomal protein L40