IL_5APO_131
3D structure
- PDB id
- 5APO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.41 Å
Loop
- Sequence
- CAACG*UUG
- Length
- 8 nucleotides
- Bulged bases
- 5APO|1|5|U|3259||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5APO_131 not in the Motif Atlas
- Homologous match to IL_8C3A_133
- Geometric discrepancy: 0.2255
- The information below is about IL_8C3A_133
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60154.1
- Basepair signature
- cWW-L-cWW-L-L
- Number of instances in this motif group
- 3
Unit IDs
5APO|1|5|C|3225||||P_1
5APO|1|5|A|3226||||P_1
5APO|1|5|A|3227||||P_1
5APO|1|5|C|3228||||P_1
5APO|1|5|G|3229||||P_1
*
5APO|1|5|U|3258||||P_1
5APO|1|5|U|3259||||P_1
5APO|1|5|G|3260||||P_1
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain E
- 60S RIBOSOMAL PROTEIN EL6
- Chain M
- 60S ribosomal protein L14-A
- Chain O
- 60S ribosomal protein L16-A
- Chain f
- 60S ribosomal protein L33-A
Coloring options: