IL_5B2P_006

3D structure

PDB id

5B2P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Francisella novicida Cas9 in complex with sgRNA and target DNA (TGA PAM)

Experimental method

X-RAY DIFFRACTION

Resolution

1.7 Å

Loop

Sequence

GATATC*GATATC

Length

12 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5B2P|1|C|DG|3
5B2P|1|C|DA|4
5B2P|1|C|DT|5
5B2P|1|C|DA|6
5B2P|1|C|DT|7
5B2P|1|C|DC|8
*
5B2P|1|D|DG|2
5B2P|1|D|DA|3
5B2P|1|D|DT|4
5B2P|1|D|DA|5
5B2P|1|D|DT|6
5B2P|1|D|DC|7

Current chains

Chain C

Target DNA

Chain D

DNA (5'-D(*TP*GP*AP*TP*AP*TP*CP*GP*G)-3')

Nearby chains

Chain A

CRISPR-associated endonuclease Cas9