IL_5BR8_017
3D structure
- PDB id
- 5BR8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Ambient-temperature crystal structure of 30S ribosomal subunit from Thermus thermophilus in complex with paromomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- GGAAGAAG*UGUAAAC
- Length
- 15 nucleotides
- Bulged bases
- 5BR8|1|A|A|412
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5BR8_017 not in the Motif Atlas
- Homologous match to IL_4LFB_017
- Geometric discrepancy: 0.0892
- The information below is about IL_4LFB_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_62329.1
- Basepair signature
- cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW
- Number of instances in this motif group
- 2
Unit IDs
5BR8|1|A|G|409
5BR8|1|A|G|410
5BR8|1|A|A|411
5BR8|1|A|A|412
5BR8|1|A|G|413
5BR8|1|A|A|414
5BR8|1|A|A|415
5BR8|1|A|G|416
*
5BR8|1|A|U|427
5BR8|1|A|G|428
5BR8|1|A|U|429
5BR8|1|A|A|430
5BR8|1|A|A|431
5BR8|1|A|A|432
5BR8|1|A|C|433
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain D
- 30S ribosomal protein S4
- Chain L
- 30S ribosomal protein S12
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