IL_5BR8_058

3D structure

PDB id

5BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ambient-temperature crystal structure of 30S ribosomal subunit from Thermus thermophilus in complex with paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGAG*UGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5BR8_058 not in the Motif Atlas

Homologous match to IL_4LFB_060

Geometric discrepancy: 0.1288

The information below is about IL_4LFB_060

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

5BR8|1|A|G|1416
5BR8|1|A|G|1417
5BR8|1|A|A|1418
5BR8|1|A|G|1419
*
5BR8|1|A|U|1481
5BR8|1|A|G|1482
5BR8|1|A|A|1483
5BR8|1|A|C|1484

Current chains

Chain A

16S ribosomal RNA

Nearby chains