IL_5BR8_065

3D structure

PDB id

5BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ambient-temperature crystal structure of 30S ribosomal subunit from Thermus thermophilus in complex with paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UAGGGAAC*GGUGCCCCGCGAGGGGAGCCCUA

Length

31 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5BR8|1|A|U|1000
5BR8|1|A|A|1001
5BR8|1|A|G|1002
5BR8|1|A|G|1003
5BR8|1|A|G|1003|||A
5BR8|1|A|A|1004
5BR8|1|A|A|1005
5BR8|1|A|C|1006
*
5BR8|1|A|G|1023
5BR8|1|A|G|1024
5BR8|1|A|U|1025
5BR8|1|A|G|1026
5BR8|1|A|C|1027
5BR8|1|A|C|1028
5BR8|1|A|C|1029
5BR8|1|A|C|1030
5BR8|1|A|G|1030|||A
5BR8|1|A|C|1030|||B
5BR8|1|A|G|1030|||C
5BR8|1|A|A|1030|||D
5BR8|1|A|G|1031
5BR8|1|A|G|1032
5BR8|1|A|G|1033
5BR8|1|A|G|1034
5BR8|1|A|A|1035
5BR8|1|A|G|1036
5BR8|1|A|C|1037
5BR8|1|A|C|1038
5BR8|1|A|C|1039
5BR8|1|A|U|1040
5BR8|1|A|A|1041

Current chains

Chain A

16S ribosomal RNA

Nearby chains