IL_5BTM_001
3D structure
- PDB id
- 5BTM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of AUUCU repeating RNA that causes spinocerebellar ataxia type 10 (SCA10)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.78 Å
Loop
- Sequence
- UUCUA*UUCUA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- Triple non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_49751.2
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
5BTM|1|A|U|10
5BTM|1|A|U|11
5BTM|1|A|C|12
5BTM|1|A|U|13
5BTM|1|A|A|14
*
5BTM|1|A|U|42
5BTM|1|A|U|43
5BTM|1|A|C|44
5BTM|1|A|U|45
5BTM|1|A|A|46
Current chains
- Chain A
- RNA (55-mer)
Nearby chains
- Chain B
- RNA (55-mer)
Coloring options: