IL_5CNR_004

3D structure

PDB id

5CNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure-guided design of self-assembling RNA nano triangles

Experimental method

X-RAY DIFFRACTION

Resolution

2.59 Å

Loop

Sequence

CUACCCACC*GAGG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Reverse kink-turn related

Broad Annotation

No text annotation

Motif group

IL_03350.1

Basepair signature

cWW-tWH-cWW-L-L-cWW-L-L-L

Number of instances in this motif group

3

Unit IDs

5CNR|1|A|C|5
5CNR|1|A|U|6
5CNR|1|A|A|7
5CNR|1|A|C|8
5CNR|1|A|C|9
5CNR|1|A|C|10
5CNR|1|A|A|11
5CNR|1|A|C|12
5CNR|1|A|C|13
*
5CNR|1|B|G|38
5CNR|1|B|A|39
5CNR|1|B|G|40
5CNR|1|B|G|41

Current chains

Chain A

RNA (5'-R(*GP*UP*CP*UP*AP*CP*CP*CP*AP*CP*CP*UP*CP*GP*CP*C)-3')

Chain B

RNA (5'-R(*AP*GP*AP*GP*GP*AP*CP*GP*GP*CP*G)-3')

Nearby chains